Good. Your not supposed to be able to move the vgt arm while running. Our issue was that we could move the arm with the truck running. Pretty much rules out your vgt actuator being bad.
I'll let these more experience guys help out some more. I was trying to help from my experience working on the engine but I feel this is over my head. My best suggestion is to go through your engine very methodically and look for any plugs or connections that may not be plugged in all the way, at all, or securely. If you were pushing to get it done, and I understand why you were, there's a good chance they missed something. I know we missed one plug each of 2 times we took the cab off.