I put a NVK4 in my E99 without issues. Putting a e99 pcm in late 99-2003 7.3s will turn on the SES light.
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Ive done this multiple times. The "guy" that cut my harness instead of the ziptie holding it together is running an nvk versus the e99. The eclb e99 i bought last year and flipped with a 38r, 160/30s and vb is rinning an nvk 4 and it works really well.
Ive never put an old pcm into a newer pcm.