Is there a better way to.fill the cooling system after a engine.removal? I have patience but is there a way to.force coolant through easier? Fill it with the drains out to help get air moving? Im not.a.total moron but I am being serious right.now.
I would take a peek at the downpipe, sounds like it may just be contacting the frame or body someplace. It could be that once a bit of load it put on the motor, it shifts over a bit and and I the clearance issues opens up a bit....if that makes any sense.
If you cannot find any issues there double check the converter nuts. If that looks fine try shooting a bit of WD-40 between the converter and flex plate if you can. Chances are you didn't lube the "nose" of the converter, that will cause some interesting noises as the converter/ flex plate flexes with rpm.