Check the pins on the actual FICM, and on the injectors throwing the codes, the harness isn't going to become faulty that quick, it will show symptoms. Does the buzz from the injectors sound quieter or weaker than before? Clear codes, try and start it, if the codes come back, you have damaged pins, or the connectors on the FICM/injectors are not all the way in. Check, check, and re-check. Something was dislodged during the install.
Edit: if the FICM is plugged in from the engine harness connector, it will still read 48 volts. The last two connectors connect each bank of injectors (1,3,5,7) (2,4,6,8) so a combination of those two could be loose and still read power on the FICM. Did you remove the intake manifold entirely when you did the delete? If you removed the injector harness when you pulled the manifold, ensure you did not bend one of the four pins inside the connectors when you re installed the harness. Best of luck.