I totally get the point of saving the cost of boring and pistons. Over the years I have assembled some engines with less than ideal cylinders. Most did ok, a few didn’t.
Here are a few things I’d think about:
If none of the “pits” were deep enough to catch a pick in, they were just stains and not a concern.
Ball hones follow the existing surface but don’t correct or show you low spots, taper or out of round. May not be an issue but I like to use a dial bore gauge to check. Good machine shop will have one and check for you.